these analyses it became clear that the MHC class I molecule com- prised
a distinct groove on the external side of the molecule. The sides of the
groove are formed by the a-helical structures of the a and a 1 2 domains
and a floor which is formed by 8 anti-parallel 13 strands. The various
polymorphic residues, as determined from DNA sequence analysis, are
localized within these a-helices and 13-plated sheets within the groove.
More importantly, these analyses also revealed the presence of elec-
tron-dense material in the groove. This material was subsequently iden-
568 10 tified as a linear peptide of 8-10 amino acids long. - -- High
resolu- tion crystallographic analyses of the class I MHC structure have
revealed the existence of so-called pockets within the grooves of the
MHC class I molecules. These pockets designated A-F, exhibited
allele-specificity and are directly involved in the binding of the
peptide, primarily through interaction with the dominant anchor residues
as found in MHC class I associated pep tides. 6,7,9,11 The class II MHC
antigens consist on the cell surface of a 34 kD a chain non-covalently
associated with a 28 kD 13 chain. With the excep- tion of the DR
a-chain, all other MHC class II a and 13 chains are poly- morphic.